Index

A

aa() (thunor.curve_fit.HillCurveLL4 method) aa_obs() (in module thunor.curve_fit) AAFitWarning

adjusted_r_squared() (in module thunor.dip) assay_names (thunor.io.HtsPandas attribute) auc() (thunor.curve_fit.HillCurveLL4 method) AUCFitWarning

C

CannotPlotError cell_lines (thunor.io.HtsPandas attribute) col_iterator() (thunor.io.PlateMap method) convert_ctrp() (in module thunor.converters)

convert_gdsc() (in module thunor.converters) convert_gdsc_tags() (in module thunor.converters) convert_teicher() (in module thunor.converters) ctrl_dip_rates() (in module thunor.dip)

D

dip_assay_name (thunor.io.HtsPandas attribute) dip_rates() (in module thunor.dip)

doses_unstacked() (thunor.io.HtsPandas method) DrugCombosNotImplementedError drugs (thunor.io.HtsPandas attribute)

E

ec() (thunor.curve_fit.HillCurveLL4 method)

expt_dip_rates() (in module thunor.dip)

F

filter() (thunor.io.HtsPandas method) fit_drc() (in module thunor.curve_fit) fit_fn() (thunor.curve_fit.HillCurveLL2 class method) (thunor.curve_fit.HillCurveLL3u class method) (thunor.curve_fit.HillCurveLL4 class method)

fit_params() (in module thunor.curve_fit) fit_params_from_base() (in module thunor.curve_fit) fit_params_minimal() (in module thunor.curve_fit) format_dose() (in module thunor.helpers)

H

HillCurve (class in thunor.curve_fit) HillCurveLL2 (class in thunor.curve_fit) HillCurveLL3u (class in thunor.curve_fit)

HillCurveLL4 (class in thunor.curve_fit) HillCurveNull (class in thunor.curve_fit) HtsPandas (class in thunor.io)

I

ic() (thunor.curve_fit.HillCurveLL4 method) initial_guess() (thunor.curve_fit.HillCurveLL2 class method) (thunor.curve_fit.HillCurveLL3u class method) (thunor.curve_fit.HillCurveLL4 class method)

is_param_truncated() (in module thunor.curve_fit)

M

max_fit_evals (thunor.curve_fit.HillCurveLL3u attribute) module thunor.converters thunor.curve_fit thunor.dip thunor.helpers thunor.io thunor.plots thunor.viability

N

null_response_fn() (thunor.curve_fit.HillCurve method) (thunor.curve_fit.HillCurveLL3u static method)

num_wells (thunor.io.PlateMap property)

P

plate() (thunor.io.HtsPandas method) plate_size_from_num_wells() (thunor.io.PlateMap class method) PlateData (class in thunor.io) PlateFileParseException PlateMap (class in thunor.io) plot_ctrl_cell_counts_by_plate() (in module thunor.plots) plot_ctrl_dip_by_plate() (in module thunor.plots)

plot_drc() (in module thunor.plots) plot_drc_params() (in module thunor.plots) plot_drug_combination_heatmap() (in module thunor.plots) plot_plate_map() (in module thunor.plots) plot_time_course() (in module thunor.plots) plot_two_dataset_param_scatter() (in module thunor.plots) plotly_to_dataframe() (in module thunor.helpers)

R

read_hdf() (in module thunor.io)

read_vanderbilt_hts() (in module thunor.io) row_iterator() (thunor.io.PlateMap method)

T

thunor.converters module thunor.curve_fit module thunor.dip module thunor.helpers module

thunor.io module thunor.plots module thunor.viability module tyson1() (in module thunor.dip)

V

ValueWarning

viability() (in module thunor.viability)

W

well_id_to_name() (thunor.io.PlateMap method) well_iterator() (thunor.io.PlateMap method) well_list() (thunor.io.PlateMap method)

well_name_to_id() (thunor.io.PlateMap method) write_hdf() (in module thunor.io) write_vanderbilt_hts() (in module thunor.io)